Slide 1
Soil Biota
LHAP 105
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What is Soil Biota?
“micro-organisms (bacteria, archaea, fungi, and algae), soil animals (protozoa, nematodes, mites, springtails, spiders, insects, and earthworms) and plants living all or part of their lives in or on the soil or pedosphere.”
Fortuna, A. (2012) The Soil Biota. Nature Education Knowledge 3(10):1 - Glossary
https://www.nature.com/scitable/knowledge/library/the-soil-biota-84078125/
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What do Soil Organisms do?
They grow and reproduce
They feed on by-products from roots (exudates) and plant and animal residue and feed on each other.
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What do soil organisms need?
Air - oxygen
Water
Food - carbon, nitrogen
pH
Non toxic environment
https://canvas.instructure.com/courses/1286132/pages/unit-1-part-4-soil-biological-properties?module_item_id=16052970
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What do Soil Organisms give ?
decompose organic matter
cycle nutrients
Add nutrients to the soil
build soil structure
control populations of soil organisms (predators)
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Photo from Natural Resource Conservation Service USDA
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C:N ratios
Bacteria 5:1
Protozoa 30:1
If one protozoa eats 6 bacteria it will consume 30 carbons but will also consume 6 nitrogens. The excessive 5 nitrogens is expelled into the soil to be taken up by plants or eaten by other organisms.
Nutrient Cycling
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Macro animals -
Burrowing animals, slugs, worms, insects
Shredders and mixers
Ingest smaller organisms
Soil Organisms include:
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Arthropods
springtails, beetles, ants, crustaceans, myriapods, scorpions
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Earthworms
decompose organic matter, casts contain nutrients and micro-organisms, create burrows in soil
Do not release earthworms in the Boreal Forest
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Living Organisms:
bacteria, fungi, nematodes, protozoa, earthworms, arthropods, and living roots
Soil Organic Matter includes:
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Plant Material
Soil Biota includes:
Create carbohydrates, sugars etc through photosynthesis
Convert nitrates and phosphorus etc. to organic compounds
In Rhizosphere
Contribute organic compounds (exudates) which provide a food
source for microorganisms
https://jr.brainpop.com/science/plants/plantlifecycle/
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Micro plants
Algae - Blue green (Cyanobacteria)
Present where moisture and sunlight are available - photosynthesis
Small impact on Soil organic matter
Convert atmospheric N to a plant available form
Soil Biota includes:
https://www.pthorticulture.com/en/training-center/controlling-algae-on-growing-media/
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Micro-animals
nematodes, protozoa ( include amoeba, flagellates, ciliates)
Feed on smaller organisms (bacteria)
nematodes feed on larvae of insectsand fungi as well as bacteria
Soil Biota includes:
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Bacteria
Very small - round or rod shaped (1 micrometer)
Covered in slime
Don’t move much
Advantage is reproductive rate
(Can double every 20 minutes)
Diversity important
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Bacteria
Decomposers
(Heterotrophs - carbon from OM)
Contain enzymes that break down
sugars, carbohydrates, proteins
Chemoautotrophs
Transform nutrients from carbon in the airImportant in nitrogen cycling and degrading pollutants
Mutualists (Rhizobium)
Pathogens
https://en.wikipedia.org/wiki/Bacillus_megaterium
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Bacteria
Create micro- aggregates
Affects water movement
Improve water holding capacity
Compete with disease causing organisms
Rhizobium - Heterotroph
Nitrifying and denitrifying bacteria - N cycle
Actinomycetes - earth smell chitin and cellulose at high pH levels
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Fungi
Form Hyphae Mycellium
Grow from apex of “root”
Generally create acid soils
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Fungi
Decomposers - have the ability to break down complex compounds other organisms can’t
Form stable macroaggregates
Retain and release nutrients in plant available form.
Help increase humus by production of organic acids
PHOTO: Kirill Ignatyev/Flickr
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Fungi
Mutualists - mycorrhizae
Pathogens and parasites
Mycorrhizae
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Where do soil organisms live?
around the roots - Rhizosphere
Root Cap
Meristem
Zone of Elongation
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The Rhizosphere
The Bacteria and fungi feed on plant exudates
they decompose organic substances
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The Rhizosphere
Protozoa graze on bacteria Nematodes eat bacteria and fungi
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In Litter
Fungi -
complex, hard-to-decompose carbon
Bacteria & Fungi
attack plant residue shredders break up litter
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In Litter
Shredders -
earthworms
millipedes
leaf-eating insects
other arthropods
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Where do soil organisms live?
On the Surface of Soil Aggregates
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And in spaces between aggregates
https://www.agric.wa.gov.au/dispersive-and-sodic-soils/soil-aggregate-stability
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The importance of soil organisms and the role of carbon - Dr Graham Stirling
Extracted Slide Text and Images
Text and media extracted locally from the presentation.
Slide 1
Soil Biota
LHAP 105
Slide 2
What is Soil Biota?
“micro-organisms (bacteria, archaea, fungi, and algae), soil animals (protozoa, nematodes, mites, springtails, spiders, insects, and earthworms) and plants living all or part of their lives in or on the soil or pedosphere.”
Fortuna, A. (2012) The Soil Biota. Nature Education Knowledge 3(10):1 - Glossary
If one protozoa eats 6 bacteria it will consume 30 carbons but will also consume 6 nitrogens. The excessive 5 nitrogens is expelled into the soil to be taken up by plants or eaten by other organisms.
Actinomycetes - earth smell chitin and cellulose at high pH levels
Speaker Notes
“Certain strains of the soil bacteria Pseudomonas fluorescens have anti-fungal activity that inhibits some plant pathogens. P. fluorescens and other Pseudomonas and Xanthomonas species can increase plant growth in several ways. They may produce a compound that inhibits the growth of pathogens or reduces invasion of the plant by a pathogen. They may also produce compounds (growth factors) that directly increase plant growth.” https://www.nrcs.usda.gov/wps/portal/nrcs/detailfull/soils/health/biology/?cid=nrcs142p2_053862
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Fungi
Form Hyphae Mycellium
Grow from apex of “root”
Generally create acid soils
Slide 20
Fungi
Decomposers - have the ability to break down complex compounds other organisms can’t
Form stable macroaggregates
Retain and release nutrients in plant available form.
Help increase humus by production of organic acids
PHOTO: Kirill Ignatyev/Flickr
Speaker Notes
Release enzymes that break down lignins,
Slide 21
Fungi
Mutualists - mycorrhizae
Pathogens and parasites
Mycorrhizae
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Where do soil organisms live?
around the roots - Rhizosphere
Root Cap
Meristem
Zone of Elongation
Speaker Notes
Organisms occur wherever organic matter occurs (Ingham, 2000). Therefore, soil organisms are concentrated: around roots, in litter, on humus, on the surface of soil aggregates and in spaces between aggregates. For this reason, they are most prevalent in forested areas and cropping systems that leave a lot of biomass on the surface.
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The Rhizosphere
The Bacteria and fungi feed on plant exudates
they decompose organic substances
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The Rhizosphere
Protozoa graze on bacteria Nematodes eat bacteria and fungi